📥 Inbound Notifications 669

Time â–¾ Id From To Type Content
2026-04-05 06:44:37 urn:uuid:542d6a1a-ad37-49b8-9b99-5aebe6d2925d https://datalake.inria.fr https://inria.hal.science ["Offer","coar-notify:ReviewAction"]
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2026-04-05 06:44:07 urn:uuid:a97bf407-9974-444a-b7e1-0ca488e0d449 https://datalake.inria.fr https://inria.hal.science ["Offer","coar-notify:ReviewAction"]
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            "were analyzed by the Broad Institute's Cancer Genome Analysis WES Characterization Pipeline, in which aligned BAM files were inputted into a standard WES somatic variant-calling pipeline    and included MuTect for calling somatic single nucleotide variants (sSNVs), Strelka2    for calling small insertions and deletions (indels), deTiN    for estimating tumor-in-normal (TiN) contamination, ContEst for estimating cross-patient contamination, AllelicCapSeg for calling allelic copy number variants, and ABSOLUTE for estimating tumor purity, ploidy, cancer cell fractions, and absolute allelic copy number."
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            "Inferred allelic copy number from CNVsingle for each singlecell cluster (bottom) depicted adjacent to WES allelic copy number plots color-coded to show copy number events assigned to CLL and RS clones (Methods).",
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